Harry Potter was always a complicated lad, and you'd think nothing could top his family drama, but someone out there managed it by making Hermione part of the Dark Lord's bloodline. I've spent more hours than I'd care to admit down those rabbit holes.
Archive of Our Own is the main hub, naturally. The tag system is your friend here; you can filter by the 'Hermione Granger & Tom Riddle Voldemort' relationship tag, and often writers will add additional tags like 'Family Drama' or 'Secret Family'. The real trick is sorting by kudos or bookmarks, because a lot of these stories are one-shot ideas that don't get fully developed. I've found the longer multi-chapter fics tend to explore the family dynamics more deeply—the initial horror, the slow-burn revelation, the political fallout in the wizarding world. It's a niche within a niche.
Don't skip FanFiction.net, though its search is clunky. Try searching for 'Hermione Voldemort daughter' and then sift manually; you'll find some older classics there from before the AO3 migration. Some writers really lean into the pureblood politics angle, others into the psychological horror of Hermione discovering her own dark heritage. One I remember, 'Daughter of the Dark', had a whole subplot about her trying to hide it from Harry and Ron while being secretly drawn to dark artifacts. It got abandoned, but the existing chapters are a mood.
You might also stumble across these threads on SpaceBattles or Sufficient Velocity forums, where the premise sometimes gets a more rationalist-fiction treatment. The family drama there is less about emotional breakdowns and more about tactical consequences—how would Dumbledore's plans change, could this alter the prophecy, etc. It's a different flavor, but still scratches that 'what if' itch.