Naruto Joins The Akatsuki Novels & Stories

Oh man, this is my absolute favorite 'what if' scenario to hunt down. I'm always digging through AO3 tags like 'Akatsuki Naruto' or 'Naruto Joins Akatsuki'—you'd be surprised how many there are, and they go in wildly different directions. Some are just pure crack where he's Pain's weird little brother figure and they order terrible pizza, but the good ones really dig into the psychology.

There's one I remember, 'Deviant' by Laluzi on FFN, that handles it fantastically. It's not a quick heel-turn; Naruto ends up with them after a genuinely tragic divergence post-Wave Mission. The slow corruption of his idealism while he's trying to 'fix' the organization from within is heartbreaking. It's less about him being evil and more about him being utterly, tragically lost. That specific story got me hooked on the trope because it treated the premise with real weight.

The tone can swing from grimdark tragedy to surprisingly wholesome found-family stuff. I've seen a few where he bonds with Kisame over shared outsider status, or drives Konan up the wall with his messiness. The dynamic with Itachi is always a huge draw—that mentor/student, older brother/younger brother tension is a goldmine for angst or unexpected camaraderie.

The Akatsuki were never about recruitment, but about achieving shared goals through coercion. Naruto joining wouldn't be a matter of him being corrupted and turning evil, it would be a complete fracturing of his character's core premise. The entire emotional engine of the series is his quest for acknowledgment and belonging within the Leaf system he was ostracized by. If he swapped sides, you'd have to rewind time to before he formed Team 7, to a point where his loneliness wasn't answered by Iruka and Sakura and Sasuke, but by someone like Pain or Obito offering a twisted version of that belonging. His relationships wouldn't 'shift'—they'd never exist. There's no 'Uzumaki Naruto' as we know him on that path. It becomes a different character wearing his face, and any fanfic that tries to play it straight without addressing that fundamental paradox usually falls flat for me.

I've read a few attempts where he's a plant from the start, a sleeper agent, and those work better because they're not about him 'joining' but about him being placed there. The dynamic with Sasuke becomes pure mirrored antagonism from the jump, which is cold but logically consistent. The connection with Hinata or Sakura never sparks. Jiraiya might be his handler or his greatest failure. But the warmth, the relentless optimism that defines his bonds? That's the first casualty of that choice.

Imagine Naruto stepping into Akatsuki’s ranks and rising to lead them — that’s the kind of alternate-universe twist that makes my brain light up. In 'Naruto' he’s built on empathy, relentless optimism, and an ability to inspire people who’ve been written off; those traits would be wildly out of place in a group born from pain, secrecy, and coercion. Leadership in Akatsuki doesn’t just mean giving orders: it means commanding fear, holding secrets like weapons, and persuading morally gray loners to follow a plan that often requires ruthless sacrifices. Naruto’s instinct is to break that cycle, not perpetuate it.

Practically speaking, there are massive structural hurdles. Early Akatsuki leadership (Nagato/Pain, and later Obito/Tobi) is built around ideological control and absolute power — not someone who gives speeches about bonds. Members like Itachi or Kisame aren’t the kind to bend overnight, and the organization’s networks are criminal and clandestine. If Naruto were to become leader without radically changing how he was raised or without being manipulated into a darker path, the group would likely reject him or fracture. Conversely, if Naruto were corrupted or controlled (think a Tobi-style manipulation), he could seize leadership by force, but that would be a very different character arc.

I like imagining the version where Naruto infiltrates and transforms Akatsuki from within: he flips members by connecting to their traumas, turning villains into allies and using the organization’s influence to push for real peace. That’s more ’Naruto’ than a dictator scenario, and it would make for incredible drama — bittersweet, complicated, and strangely hopeful. I’d read that AU in a heartbeat.