Most folks point you straight to Archive of Our Own, but honestly, the tagging system can be a double-edged sword. You need to know the exact combo of 'Undyne/Undyne the Undying' versus just 'Undyne,' and whether you're after 'Alphys/Undyne' or 'Pre-Relationship.' It's meticulous. I've had better luck on dedicated Undertale forums from a few years back that are still up, honestly. The older stuff feels less polished but way more passionate, and they didn't shy away from explicit content the way some writers on AO3 now feel pressured to.
You can sometimes find real relics on Fanfiction.net if you're willing to dig and sift through the M-rated stuff, but their filter is a blunt instrument. Tumblr is a weird mixed bag these days—so many blogs got nuked or went private, but if you find an active 'ruinstuck' or 'undertale nsfw' blog, they might have curated links or reblogs to stories hosted on Google Docs or personal sites. That's where the real niche, hyper-specific stuff lives, written by people who are truly, deeply into the dynamic's power exchange and emotional awkwardness.
The 'best' is subjective, right? Depends if you want pure smut, a slow-burn that erupts, or something that grapples with Alphys's anxiety and Undyne's intensity. No single site has a monopoly on quality for this pairing; it's about finding the writer whose character voices click for you.